Submissions from 2010

Mitochondrial DNA polymerase POLIB is essential for minicircle DNA replication in African trypanosomes, DF Bruhn, B Mozeleski, L Falkin, and MM Klingbeil

Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes, JE Butler, ND Young, and DR Lovley

Multiple bHLH proteins regulate CIT2 expression in Saccharomyces cerevisiae, LA Chen and JM Lopes

Microtoming coupled to microarray analysis to evaluate the spatial metabolic status of Geobacter sulfurreducens biofilms, AE Franks, KP Nevin, RH Glaven, and DR Lovley

Purification and Characterization of OmcZ, an Outer-Surface, Octaheme c-Type Cytochrome Essential for Optimal Current Production by Geobacter sulfurreducens, K Inoue, XL Qian, L Morgado, BC Kim, T Mester, M Izallalen, CA Salgueiro, and DR Lovley

The role of nano-scale heterogeneous electrostatic interactions in initial bacterial adhesion from flow: A case study with Staphylococcus aureus, S Kalasin, J Dabkowski, K Nusslein, and MM Santore

Alignment of the c-Type Cytochrome OmcS along Pili of Geobacter sulfurreducens, C Leang, XL Qian, T Mester, and DR Lovley

RecA4142 Causes SOS Constitutive Expression by Loading onto Reversed Replication Forks in Escherichia coli K-12, JE Long, SC Massoni, and SJ Sandler

De Novo Assembly of the Complete Genome of an Enhanced Electricity-Producing Variant of Geobacter sulfurreducens Using Only Short Reads, H Nagarajan, JE Butler, A Klimes, Y Qiu, K Zengler, J Ward, ND Young, BA Methe, BO Palsson, DR Lovley, and CL Barrett

Molecular analysis of phosphate limitation in Geobacteraceae during the bioremediation of a uranium-contaminated aquifer, AL N'Guessan, H Elifantz, KP Nevin, PJ Mouser, B Methe, T LWoodard, K Manley, KH Williams, MJ Wilkins, JT Larsen, PE Long, and DR Lovley

Biotechnological potential of aquatic plant-microbe interactions, L Stout and K Nusslein

Reductive dechlorination of 2-chlorophenol by Anaeromyxobacter dehalogenans with an electrode serving as the electron donor, SM Strycharz, SM Gannon, AR Boles, AE Franks, KP Nevin, and DR Lovley

Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species, T Ueki and DR Lovley

Role of Geobacter sulfurreducens Outer Surface c-Type Cytochromes in Reduction of Soil Humic Acid and Anthraquinone-2,6-Disulfonate, JW Voordeckers, BC Kim, M Izallalen, and DR Lovley

Electrode-Based Approach for Monitoring In Situ Microbial Activity During Subsurface Bioremediation, KH Williams, KP Nevin, A Franks, A Englert, PE Long, and DR Lovley

Electrodic voltages accompanying stimulated bioremediation of a uranium-contaminated aquifer, KH Williams, AL N'Guessan, J Druhan, PE Long, SS Hubbard, DR Lovley, and JF Banfield

Stimulating the anaerobic degradation of aromatic hydrocarbons in contaminated sediments by providing an electrode as the electron acceptor, T Zhang, SM Gannon, KP Nevin, AE Franks, and DR Lovley

Modeling and sensitivity analysis of electron capacitance for Geobacter in sedimentary environments, J Zhao, YL Fang, TD Scheibe, DR Lovley, and R Mahadevan

Submissions from 2009

The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens, M Aklujkar, J Krushkal, G DiBartolo, A Lapidus, ML Land, and DR Lovley

Microcosm-based Study of the Attenuation of an Acid Mine Drainage-Impacted Site through Biological Sulfate and Iron Reduction, CA Becerra, EL Lopez-Luna, SJ Ergas, and K Nusslein

Evolution from a respiratory ancestor to fill syntrophic and fermentative niches: comparative genomics of six Geobacteraceae species, JE Butler, ND Young, and DR Lovley

UvrD303, a Hyperhelicase Mutant That Antagonizes RecA-Dependent SOS Expression by a Mechanism That Depends on Its C Terminus, RC Centore, MC Leeson, and SJ Sandler

Hydrophilic Modifications of an Amphiphilic Polynorbornene and the Effects on its Hemolytic and Antibacterial Activity, S Colak, CF Nelson, K Nusslein, and GN Tew

Hierarchical Bayesian meta-analysis models for cross-platform microarray studies, EM Conlon, BL Postier, BA Methe, KP Nevin, and DR Lovley

Novel strategy for three-dimensional real-time imaging of microbial fuel cell communities: monitoring the inhibitory effects of proton accumulation within the anode biofilm, AE Franks, KP Nevin, HF Jia, M Izallalen, TL Woodard, and DR Lovley

Comparison of Facially Amphiphilic versus Segregated Monomers in the Design of Antibacterial Copolymers, GJ Gabriel, JA Maegerlein, CE Nelson, JM Dabkowski, T Eren, K Nusslein, and GN Tew

Single Molecule Analysis of a Red Fluorescent RecA Protein Reveals a Defect in Nucleoprotein Filament Nucleation That Relates to Its Reduced Biological Functions, N Handa, I Amitani, N Gumlaw, SJ Sandler, and SC Kowalczykowski

Polar lipid fatty acids, LPS-hydroxy fatty acids, and respiratory quinones of three Geobacter strains, and variation with electron acceptor, DB Hedrick, AD Peacock, DR Lovley, TL Woodard, KP Nevin, PE Long, and DC White

Potential Role of a Novel Psychrotolerant Member of the Family Geobacteraceae, Geopsychrobacter electrodiphilus gen. nov., sp. nov., in Electricity Production by a Marine Sediment Fuel Cell (vol 70, pg 6023, 2004), DE Holmes, JS Nicoll, DR Bond, and DR Lovley

Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments, DE Holmes, RA O'Neil, MA Chavan, LA N'Guessan, HA Vrionis, LA Perpetua, MJ Larrahondo, R DiDonato, A Liu, and DR Lovley

Environmental Sequence Data from the Sargasso Sea Reveal That the Characteristics of Genome Reduction in Prochlorococcus Are Not a Harbinger for an Escalation in Genetic Drift, JH Hu and JL Blanchard

Regulated transcription of the Saccharomyces cerevisiae phosphatidylinositol biosynthetic gene, PIS1, yields pleiotropic effects on phospholipid synthesis, NM Jani and JM Lopes

PilR, a Transcriptional Regulator for Pilin and Other Genes Required for Fe(III) Reduction in Geobacter sulfurreducens, K Juarez, BC Kim, K Nevin, L Olvera, G Reguera, DR Lovley, and BA Methe

Unraveling the Secrets of Regulating Mitochondrial DNA Replication, MM Klingbeil and TA Shapiro

Diversity of promoter elements in a Geobacter sulfurreducens mutant adapted to disruption in electron transfer, J Krushkal, C Leang, J Barbe, YH Qu, B Yan, M Puljic, R Adkins, and D Lovley

Bioinformatic analysis of gene regulation in Geobacter sulfurreducens, J Krushkal, YH Qu, P Brown, S Sontineni, T Ueki, K Juarez, C Leang, E Merino, J Peeples, JF Barbe, RM Adkins, and DR Lovley

Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens, C Leang, J Krushkal, T Ueki, M Puljic, J Sun, K Juarez, C Nunez, G Reguera, R DiDonato, B Postier, RM Adkins, and DR Lovley

"Doubly Selective" Antimicrobial Polymers: How Do They Differentiate between Bacteria?, K Lienkamp, KN Kumar, A Som, K Nusslein, and GN Tew

Antimicrobial Polymers Prepared by Ring-Opening Metathesis Polymerization: Manipulating Antimicrobial Properties by Organic Counterion and Charge Density Variation, K Lienkamp, AE Madkour, KN Kumar, K Nusslein, and GN Tew

Suppression of constitutive SOS expression by recA4162 (I298V) and recA4164 (L126V) requires UvrD and RecX in Escherichia coli K-12, JE Long, N Renzette, and SJ Sandler

Fast Disinfecting Antimicrobial Surfaces, AE Madkour, JA Dabkowski, K Nusslein, and GN Tew

Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation, PJ Mouser, DE Holmes, LA Perpetua, R DiDonato, B Postier, A Liu, and DR Lovley

Influence of Heterogeneous Ammonium Availability on Bacterial Community Structure and the Expression of Nitrogen Fixation and Ammonium Transporter Genes during in Situ Bioremediation of Uranium-Contaminated Groundwater, PJ Mouser, AL N'Guessan, H Elifantz, DE Holmes, KH Williams, MJ Wilkins, PE Long, and DR Lovley

Anode Biofilm Transcriptomics Reveals Outer Surface Components Essential for High Density Current Production in Geobacter sulfurreducens Fuel Cells, KP Nevin, BC Kim, RH Glaven, JP Johnson, TL Woodard, BA Methe, RJ DiDonato, SF Covalla, AE Franks, A Liu, and DR Lovley

GSEL Version 2, an Online Genome-Wide Query System of Operon Organization and Regulatory Sequence Elements of Geobacter sulfurreducens, YH Qu, P Brown, JF Barbe, M Puljic, E Merino, RM Adkins, DR Lovley, and J Krushkal

Cyclic voltammetry of biofilms of wild type and mutant Geobacter sulfurreducens on fuel cell anodes indicates possible roles of OmcB, OmcZ, type IV pili, and protons in extracellular electron transfer, H Richter, KP Nevin, HF Jia, DA Lowy, DR Lovley, and LM Tender

Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens, C Risso, J Sun, K Zhuang, R Mahadevan, R Deboy, W Ismail, S Shrivastava, H Huot, S Kothari, S Daugherty, O Bui, CH Schilling, DR Lovley, and BA Methe

Hydrogenotrophic Denitrification and Perchlorate Reduction in Ion Exchange Brines Using Membrane Biofilm Reactors, AK Sahu, T Conneely, K Nusslein, and SJ Ergas

Biological Perchlorate Reduction in Packed Bed Reactors Using Elemental Sulfur, AK Sahu, T Conneely, KR Nusslein, and SJ Ergas

Genome-scale constraint-based modeling of Geobacter metallireducens, J Sun, B Sayyar, JE Butler, P Pharkya, TR Fahland, I Famili, CH Schilling, DR Lovley, and R Mahadevan

Abundances of Hyperthermophilic Autotrophic Fe(III) Oxide Reducers and Heterotrophs in Hydrothermal Sulfide Chimneys of the Northeastern Pacific Ocean, HC Ver Eecke, DS Kelley, and JF Holden

Occurrence of Chlamydia trachomatis and Chlamydia pneumoniae in paediatric respiratory infections, WC Webley, Y Tilahun, K Lay, K Patel, ES Stuart, C Andrzejewski, and PS Salva

Occurrence of Chlamydia trachomatis and Chlamydia pneumoniae in paediatric respiratory infections, WC Webley, Y Tilahun, K Lay, K Patel, ES Stuart, C Andrzejewski, and PS Salva

Proteogenomic Monitoring of Geobacter Physiology during Stimulated Uranium Bioremediation, MJ Wilkins, NC VerBerkmoes, KH Williams, SJ Callister, PJ Mouser, H Elifantz, AL N'Guessan, BC Thomas, CD Nicora, MB Shah, P Abraham, MS Lipton, DR Lovley, RL Hettich, PE Long, and JF Banfield

Selection of a variant of Geobacter sulfurreducens with enhanced capacity for current production in microbial fuel cells, HN Yi, KP Nevin, BC Kim, AE Franks, A Klimes, LM Tender, and DR Lovley

Submissions from 2008

Investigating the Effect of Increasing Charge Density on the Hemolytic Activity of Synthetic Antimicrobial Polymers, ZM Al-Badri, A Som, S Lyon, CF Nelson, K Nusslein, and GN Tew

Relational learning in children with deafness and cochlear implants, AC Almeida-Verdu, EM Huziwara, DG De Souza, JC De Rose, M Cecilia-Bevilacqua, J Lopes, CO Alves, and WJ McIlvane

XthA (Exonuclease III) regulates loading of RecA onto DNA substrates in log phase Escherichia coli cells, RC Centore, R Lestini, and SJ Sandler

Stem-Loop Silencing Reveals that a Third Mitochondrial DNA Polymerase, POLID, Is Required for Kinetoplast DNA Replication in Trypanosomes, J Chandler, AV Vandoros, B Mozeleski, and MM Klingbeil

Quantifying expression of a dissimilatory (bi) sulfite reductase gene in petroleum-contaminated marine Harbor Sediments, KJ Chin, ML Sharma, LA Russell, KR O'Neill, and DR Lovley

Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor, YHR Ding, KK Hixson, MA Aklujkar, MS Lipton, RD Smith, DR Lovley, and T Mester

Antibacterial and hemolytic activities of quaternary pyridinium functionalized polynorbornenes, T Eren, A Som, JR Rennie, CF Nelson, Y Urgina, K Nusslein, EB Coughlin, and GN Tew

Fluorescent properties of c-type cytochromes reveal their potential role as an extracytoplasmic electron sink in Geobacter sulfurreducens, A Esteve-Nunez, J Sosnik, P Visconti, and DR Lovley

Constraints on anaerobic respiration in the hyperthermophilic archaea Pyrobaculum islandicum and Pyrobaculum aerophilum, LF Feinberg, R Srikanth, RW Vachet, and JF Holden

A new model linking atmospheric methane sources to Pleistocene glaciation via methanogenesis in sedimentary basins, MJ Formolo, JM Salacup, ST Petsch, AM Martini, and K Nusslein

Synthetic Mimic of Antimicrobial Peptide with Nonmembrane-Disrupting Antibacterial Properties, GJ Gabriel, AE Madkour, JM Dabkowski, CF Nelson, K Nusslein, and GN Tew

RecA-mediated SOS induction requires an extended filament conformation but no ATP hydrolysis, MC Gruenig, N Renzette, E Long, S Chitteni-Pattu, RB Inman, MM Cox, and SJ Sandler

Genome-wide gene expression patterns and growth requirements suggest that Pelobacter carbinolicus reduces Fe(III) indirectly via sulfide production, SA Haveman, RJ DiDonato, L Villanueva, ES Shelobolina, BL Postier, B Xu, A Liu, and DR Lovley

Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes, DE Holmes, T Mester, RA O'Neil, LA Perpetua, MJ Larrahondo, R Glaven, ML Sharma, JE Ward, KP Nevin, and DR Lovley

Geobacter sulfurreducens strain engineered for increased rates of respiration, M Izallalen, R Mahadevan, A Burgard, B Postier, R Didonato, J Sun, CH Schilling, and DR Lovley

Transcription regulation of the Saccharomyces cerevisiae PIS1 gene by inositol and the pleiotropic regulator, Ume6p, NM Jani and JM Lopes

Characterization of extracellular minerals produced during dissimilatory Fe(III) and U(VI) reduction at 100 degrees C by Pyrobaculum islandicum, K Kashefi, BM Moskowitz, and DR Lovley

Growth of thermophilic and hyperthermophilic Fe (III)-reducing microorganisms on a ferruginous smectite as the sole electron acceptor, K Kashefi, ES Shelobolina, WC Elliott, and DR Lovley

Investigation of direct vs. indirect involvement of the c-type cytochrome MacA in Fe(III) reduction by Geobacter sulfurreducens, BC Kim and DR Lovley

Insights into genes involved in electricity generation in Geobacter sulfurreducens via whole genome microarray analysis of the OmcF-deficient mutant, BC Kim, BL Postier, RJ DiDonato, SK Chaudhuri, KP Nevin, and DR Lovley

Insights into genes involved in electricity generation in Geobacter sulfurreducens via whole genome microarray analysis of the OmcF-deficient mutant (vol 73, pg 70, 2008), BC Kim, BL Postier, RJ Didonato, SK Chaudhuri, KR Nevin, and DR Lovley

Growth with high planktonic biomass in Shewanella oneidensis fuel cells, M Lanthier, KB Gregory, and DR Lovley

Antimicrobial polymers prepared by ROMP with unprecedented selectivity: A molecular construction kit approach, K Lienkamp, AE Madkour, A Musante, CF Nelson, K Nusslein, and GN Tew

Differential Requirements of Two recA Mutants for Constitutive SOS Expression in Escherichia coli K-12, JE Long, N Renzette, RC Centore, and SJ Sandler

Extracellular electron transfer: wires, capacitors, iron lungs, and more, DR Lovley

The microbe electric: conversion of organic matter to electricity, DR Lovley

The degree of redundancy in metabolic genes is linked to mode of metabolism, R Mahadevan and DR Lovley

Biogeochemistry of the Forest City Basin coalbed methane play, J McIntosh, A Martini, S Petsch, R Huang, and K Nusslein

Power output and columbic efficiencies from biofilms of Geobacter sulfurreducens comparable to mixed community microbial fuel cells, KP Nevin, H Richter, SF Covalla, JP Johnson, TL Woodard, AL Orloff, H Jia, M Zhang, and DR Lovley

Sustained removal of uranium from contaminated groundwater following stimulation of dissimilatory metal reduction, AL N'Guessan, HA Vrionis, CT Resch, PE Long, and DR Lovley

GEOC 35-Biogeochemical differences in pilot-scale bioremediation treatment plots undergoing iron reduction or sulfate reduction in a uranium-contaminated aquifer, AL N'Guessan, KH Williams, S Yabusaki, PE Long, and DR Lovley

Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation, RA O'Neil, DE Holmes, MV Coppi, LA Adams, MJ Larrahondo, JE Ward, KP Nevin, TL Woodard, HA Vrionis, AL N'Guessan, and DR Lovley

Uptake and intra-inclusion accumulation of exogenous immunoglobulin by Chlamydia-infected cells, DV Pollack, NL Croteau, and ES Stuart

Benefits of in-situ synthesized microarrays for analysis of gene expression in understudied microorganisms, B Postier, R DiDonato, KP Nevin, A Liu, B Frank, D Lovley, and BA Methe

Requirements for ATP binding and hydrolysis in RecA function in Escherichia coli, N Renzette and SJ Sandler

Electricity generation by Geobacter sulfurreducens attached to gold electrodes, H Richter, K McCarthy, KP Nevin, JP Johnson, VM Rotello, and DR Lovley

Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation, C Risso, BA Methe, H Elifantz, DE Holmes, and DR Lovley

Elucidation of an alternate isoleucine biosynthesis pathway in Geobacter sulfurreducens, C Risso, SJ Van Dien, A Orloff, DR Lovley, and MV Coppi

Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens, D Segura, R Mahadevan, K Juarez, and DR Lovley

Geobacter uraniireducens sp nov., isolated from subsurface sediment undergoing uranium bioremediation, ES Shelobolina, HA Vrionis, RH Findlay, and DR Lovley

Recombinant gas vesicles from Halobacterium sp. displaying SIV peptides demonstrate biotechnology potential as a pathogen peptide delivery vehicle, M Sremac and ES Stuart

Graphite electrode as a sole electron donor for reductive dechlorination of tetrachlorethene by Geobacter lovleyi, SM Strycharz, TL Woodard, JP Johnson, KP Nevin, RA Sanford, FE Loffler, and DR Lovley

Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function, HT Tran, J Krushkal, FM Antommattei, DR Lovley, and RM Weis

Quantification of Desulfovibrio vulgaris dissimilatory sulfite reductase gene expression during electron donor- and electron acceptor-limited growth, L Villanueva, SA Haveman, ZM Summers, and DR Lovley