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<title>Animal Biotechnology &amp; Biomedical Sciences Graduate Program Masters Theses Collection</title>
<copyright>Copyright (c) 2013 University of Massachusetts - Amherst All rights reserved.</copyright>
<link>http://scholarworks.umass.edu/vasci_theses</link>
<description>Recent documents in Animal Biotechnology &amp; Biomedical Sciences Graduate Program Masters Theses Collection</description>
<language>en-us</language>
<lastBuildDate>Sat, 26 Jan 2013 00:12:45 PST</lastBuildDate>
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<title>Regulation of the Acrosome Reaction by the Transmembrane Adenylyl Cyclase</title>
<link>http://scholarworks.umass.edu/theses/905</link>
<guid isPermaLink="true">http://scholarworks.umass.edu/theses/905</guid>
<pubDate>Fri, 23 Nov 2012 07:10:38 PST</pubDate>
<description>
	<![CDATA[
	<p><strong>ABSTRACT</strong></p>
<p>REGULATION OF THE ACROSOME REACTION BY THE</p>
<p>TRANSMEMBRANE ADENYLYL CYCLASE</p>
<p>SEPTEMBER 2012</p>
<p>DOUGLAS HADDAD, B.S., UNIVERSITY OF MASSACHUSETTS AMHERST</p>
<p>M.Sc., UNIVERSITY OF MASSACHUSETTS AMHERST</p>
<p>Directed by: Pablo Visconti</p>
<p>Capacitation prepares mammalian sperm to undergo a process known as the acrosome reaction, which enables them to penetrate the zona pellucida. The standard method of measuring the acrosome reaction has been over the years the staining of the acrosome and visual counting using light or fluorescence microscopy. In this study we explored the intracellular signaling that results in the acrosome reaction using a novel method. This method employs the use of transgenic mice that contain green fluorescent protein, GFP, in the sperm acrosome. The quantity of sperm either containing or lacking GFP is precisely and rapidly quantified with flowcytometry. Currently little is known about the signaling processes that lead to the acrosome reaction. It has been proposed that this reaction is regulated by the cAMP activated guanine nucleotide exchange factor, Epac. In human sperm, stimulation of this pathway leads to an increase in acrosomal exocytosis. Furthermore, previous studies from our laboratory indicated that Gα<sub>s </sub>is present in the mouse sperm anterior head. These results suggest that in mouse sperm, the cAMP pathway leading to the acrosome reaction could be stimulated by Gα<sub>s </sub>associated with a transmembrane adenylyl cyclase. In this study we first validated the ability of known reaction inducers to increase the rate of the acrosome exocytosis in mouse sperm. Progesterone, solubilized zona pellucida and calcium ionophore A23187 all showed to be very effective at inducing the acrosome reaction in mouse sperm. We then investigated the role of the cAMP pathway using a battery of cAMP agonists and antagonists. We observed that stimulation of the cAMP dependent pathway through the transmembrane adenylyl cyclases, using forskolin, inhibit the increase in acrosome reaction induced by soluble zona pellucida, progesterone and the calcium ionophore A23187. This inhibitory effect was observed only when forskolin was used before the start of capacitation. Consistent with this observation, addition of cAMP analogues including an Epac specific cAMP analogue 8-pCPT-2’-O-Me-cAMP can also inhibit the increase in acrosome reaction by progesterone. This inhibition was seen only when the pathway was stimulated from the beginning of capacitation. Altogether, these data suggest that transmembrane cyclases are involved in the regulation of mouse sperm acrosome reaction.</p>

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<author>Haddad, Douglas M.</author>

<source></source>

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<title>Notch Regulation of Adam12 Expression in Glioblastoma Multiforme</title>
<link>http://scholarworks.umass.edu/theses/889</link>
<guid isPermaLink="true">http://scholarworks.umass.edu/theses/889</guid>
<pubDate>Fri, 23 Nov 2012 07:02:13 PST</pubDate>
<description>
	<![CDATA[
	<p>Glioblastoma is the most common malignant brain tumor, accounting for 17% of all primary brain tumors in the United States. Despite the available surgical, radiation, and chemical therapeutic options, the invasive and infiltrative nature of the tumor render current treatment options minimally effective. Recent reports have identified multiple regulators of glioblastoma progression and invasiveness. It has been demonstrated that ADAM12, A Disintegrin And Metalloproteinase encoded by ADAM12 gene, is over-expressed in glioblastoma and directly correlated with tumor proliferation. Additionally, dysregulation of the Notch signaling pathway has been implicated in the pathogenesis of many gliomas. Lastly, an evolving role of microRNAs, small noncoding RNAs, in carcinogenesis is progressively growing. A recent study has identified ADAM12 as a notch-related gene, and another demonstrated that inhibition of notch signaling decreased glioblastoma recurrence. However the mechanisms of regulation are still unknown. In this study, we hypothesize that direct downregulation of microRNA-29, downstream of over-expression of notch enhances glioblastoma malignancy through upregulation of ADAM12. Although our data demonstrate upregulation of Notch1, its downstream target HES1, and ADAM12 in U87MG glioblastoma cell line. Expression of the cleaved intracellular Notch1 was not detected. Furthermore, we were unable to demonstrate an inhibitory effect of ɣ-secretase inhibitor on Notch signaling, likely reflecting the requirement for modifying culturing conditions or detection in our assays. Furthermore, miR-29 was detected in glioblastoma cells. The expression of miR-29 was further elevated by ɣ-secretase inhibitor treatment, suggesting a role for Notch1 inhibition on miR-29 expression. Although no conclusive results are shown in our work, a role of Notch1 through miR-29 is implicated in the pathogenesis of glioblastoma pathogenesis warranting further investigation into the role downstream target genes in the Notch signaling pathway.</p>

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<author>Alsyaideh, Ala&apos;a S.</author>

<source></source>

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<title>Investigating the Mechanism of Nur77-Induced Apoptosis in T Cells</title>
<link>http://scholarworks.umass.edu/theses/761</link>
<guid isPermaLink="true">http://scholarworks.umass.edu/theses/761</guid>
<pubDate>Thu, 12 Apr 2012 01:12:16 PDT</pubDate>
<description>
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	<p>Nur77 is a member of the orphan nuclear receptor family, where it is known to play an important role in apoptosis in both negative selection in T cells and in cancer cell lines. In the development of T cells, it is critical for the immune system to discriminate self from non-self by eliminating auto-reactive cells. It was originally thought that Nur77 initiated apoptosis by activating downstream gene targets. However, it is now clear that Nur77 has its own distinct role outside of the nucleus and the precise mechanisms by which Nur77 induces apoptosis in T cells still needs to be clarified. Calcium plays an important role as a second messenger in various cellular responses, one of which includes apoptosis. The IP3 receptor controls efflux of calcium from the ER and can be activated through TCR activation. This signal induces a rise in cytoplasmic calcium levels ultimately causing cell death through mechanisms that remain unclear. Here, we use a double positive DO11.10 T cell line with tetracycline responsive Nur77, to examine the effects of cytosolic Nur77. Through co-immunoprecipitation experiments we suggest, that the presence of Nur77 disrupts the IP3R/Bcl-2 interaction. In this study, we also investigated the effect of Nur77 on intracellular calcium levels. We show that Nur77 increases baseline calcium levels and causes emptying of ER calcium stores. We suggest a model where cytosolic Nur77 disrupts the IP3R/Bcl-2 interaction by binding Bcl-2 at the mitochondria or ER, causing calcium release through the IP3R and apoptosis of the cell.</p>

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<author>Fogarty, Heather E.</author>

<source></source>

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<title>Determining the Roles of Smyd3 and Wdr74 In Vivo</title>
<link>http://scholarworks.umass.edu/theses/733</link>
<guid isPermaLink="true">http://scholarworks.umass.edu/theses/733</guid>
<pubDate>Mon, 21 Nov 2011 09:41:06 PST</pubDate>
<description>
	<![CDATA[
	<p>Preimplantation is a short yet critical time period for the embryo that includes dramatic changes in gene expression and developmental potential.  During early cleavage, a combination of maternal and zygotic factors program the embryonic genome.  These dynamic events result in critical differentiation steps including the first lineage specification (ICM and TE), which is required for implantation.</p>
<p>The first half of this thesis investigates the role of Smyd3 as a possible maternal-effect gene, which was identified through an mRNA-based expression assay. Using a <em>Smyd3</em> conditional allele to remove the function of the protein, we were able to confirm successful allelic recombinations but were unable to confirm the absence of the protein. Due to a lack of a phenotype, two conclusions were made: 1) If we did disrupt Smyd3 function, the lack of a phenotype indicates that Smyd3 is not a maternal-effect gene, and is not required for embryonic viability or adult fertility. 2) It is possible that newly-annotated transcripts are responsible for the necessity of Smyd3, and that the conditional allele used did not disrupt the function of Smyd3.</p>
<p>The second half of this thesis uses a reverse genetic RNAi screen that identified <em>Wdr74</em> as being required for the critical first steps of mammalian development. Knockdown of <em>Wdr74</em> results in embryos that develop normally until the morula stage but fail to form blastocysts or properly specify the inner cell mass and trophectoderm. In Wdr74-deficient embryos, we find activated Trp53-dependent apoptosis as well as a global reduction of RNA polymerase I, II and III transcripts. In Wdr74-deficient embryos, blocking Trp53 function rescues blastocyst formation and lineage differentiation. These results indicate that Wdr74 is required for RNA transcription, processing and/or stability during preimplantation development and is an essential gene in the mouse.</p>

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<author>Walentuk, Melanie A.</author>

<source></source>

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<title>Phylogenetic, Epigenetic, and Biochemical Analysis of Testis-Specific Serine Kinases</title>
<link>http://scholarworks.umass.edu/theses/586</link>
<guid isPermaLink="true">http://scholarworks.umass.edu/theses/586</guid>
<pubDate>Wed, 24 Aug 2011 09:50:45 PDT</pubDate>
<description>
	<![CDATA[
	<p>The Testis Specific Serine Kinases (Tssks) are a family of proteins that show testis and sperm-specific expression. Members of this family are most conserved among mammals, however there are homologs in vertebrates like birds and amphibians, chordates, and other invertebrates like insects and cnidarians.  This specific expression suggests that these kinases are highly regulated.  Analysis of murine and human Tssk1, Tssk2, and Tssk6 sequences show that these genes are comprised of one exon each, suggesting they are retrotransposons.  The expression of these genes shows their importance, since many retrotransposons are silenced due to the foreign nature of the DNA, and knock-out mouse models have shown that these kinases are required for fertility.  Understanding the properties of these kinases not only expands our scientific knowledge, but also lends itself to understanding fertility issues in men as well as being a contraceptive target.  We looked at an epigenetic regulation factor, DNA methylation at CpG dinucleotides, to see if this caused the testis-specific gene expression we saw.  Tssk2 and preliminary results from Tssk1 showed that there is no differential methylation at CpG dinucleotides or between tissues.  Preliminary results for Tssk6 did show one site that may be differentially methylated, thus the tissue specific expression.  We then started looking further into biochemically characterizing TSSK1 and TSSK2 to determine functionally relevant sites and new substrates.  Understanding how these kinases function in sperm is relevant in our understanding in the fertility field and poses new targets for developing contraceptives.</p>

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<author>Brassard, Laura M.</author>

<source></source>

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<title>Designing New Approaches for the Study of Early Murine Endodermal Organogenesis using Whole Embryo Culture</title>
<link>http://scholarworks.umass.edu/theses/561</link>
<guid isPermaLink="true">http://scholarworks.umass.edu/theses/561</guid>
<pubDate>Tue, 29 Mar 2011 19:12:42 PDT</pubDate>
<description>
	<![CDATA[
	<p>This thesis investigates the applicability of novel approaches designed to study the molecular mechanisms required for the initiation of organogenesis within the early endoderm. The endoderm is the germ layer that gives rise to the gut-tube and associated organs including the thyroid, lung, liver and pancreas. Our laboratory focuses on understanding the molecular mechanisms governing the developmental transition from endoderm to liver and pancreas. Several signaling pathways including Wnt, Retinoic Acid (RA), Bone Morphogenetic Protein (BMP) and Transforming Growth Factor-β (TGFβ) have been implicated in the emergence of the liver bud from the endoderm in the mouse or other vertebrate species. However, neither the exact signals nor the precise roles during budding process have been identified, due to the complexity of specifically altering these essential pathways using traditional genetic approaches during the earliest stages of endoderm organogenesis. These traditional techniques include transgenic, knockout or conditional knockouts strategies.</p>
<p>To overcome the difficulties of genetic accessibility, our laboratory has optimized two complementary approaches, electroporation and addition of activators or inhibitors directly to the culture media, to study the earliest stages of organ formation using an ex vivo culture system (whole embryo culture), that allow us for normal embryonic development for up to two days. This ex-vivo technique also provides the opportunity to access and manipulate the endoderm, specifically the liver and pancreas precursor cells, prior to organ specification. Because the endoderm undergoes normal liver and pancreas specification in our ex vivo system by 24 hours after culture begin, we reason that it is possible to manipulate gene expression at the onset of culture. We then determine the effects of this manipulation on liver or pancreas development by molecular and morphological analysis after culture.</p>
<p>The first approach we developed is the use of directional electroporation of nucleic acids to manipulate a specific region of the endoderm, particularly on liver and pancreas developmental processes. The second method is global inhibition or activation using inhibitors or growth factors activators, focusing on the TGFβ signaling pathway. These techniques will be performed prior to, or concurrent with, liver and pancreas specification, followed by embryo culture until after the onset of organogenesis.</p>
<p>The combination of these techniques constitutes a practical approach to stage-manage the endoderm in a temporally and spatially distinct manner. In addition, it will allow us to alter specific signaling pathways without the labor-intensive generation of genetically modified animals. Indeed, establishment of these methodologies may provide a robust tool for rapid screening of candidate genes and signaling molecules underlying organogenesis in any endodermally derived organ in mouse embryos.</p>

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<author>Guerrero Zayas, Mara Isel</author>

<source></source>

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<title>Molecular Pathways Involved in Stallion Sperm Capacitation</title>
<link>http://scholarworks.umass.edu/theses/553</link>
<guid isPermaLink="true">http://scholarworks.umass.edu/theses/553</guid>
<pubDate>Tue, 29 Mar 2011 19:10:39 PDT</pubDate>
<description>
	<![CDATA[
	<p>After ejaculation, mammalian spermatozoa must undergo a series of complex and poorly understood cellular events known as “capacitation” in order to be able to fertilize an oocyte. Among these, biochemical changes such as an increase in tyrosine phosphorylation of some sperm proteins have been correlated with the sperm capacity to fertilize an egg and found to be regulated by a cAMP dependent pathway. The influx of ions such as Ca2+ and HCO3- induce the activation of a soluble adenylyl cyclase (SACY) increasing the cAMP levels within the cell that leads to the activation of a protein kinase A (PKA), and a subsequent increase in protein tyrosine phosphorylation. This modification in sperm proteins seems to be essential for induction of a change in the motility pattern known as hyperactivation that enables the sperm to penetrate the zona pellucida of the oocyte and initiate fertilization. Since PKA is a serine/threonine kinase, it is not clear how it mediates protein tyrosine phosphorylation during sperm capacitation. Based on the finding that in somatic cells PKA activates c-Src, it has been proposed that the Src family of protein kinases (SFK) are the intermediate players involved in tyrosine phosphorylation induced by PKA activity.  In order to better understand the molecular mechanisms involved in stallion sperm capacitation, the objectives of our study were: (1) To analyze PKA activity during stallion sperm capacitation (2) To evaluate the involvement of the Src family of protein kinases (SFK) on stallion sperm phosphorylation events associated with capacitation.  Standard In Vitro Fertilization (IVF) has not been reproducibly successful in the horse. Recent data indicate that good fertilization rates may be achieved after treatment of sperm with procaine to induce hyperactivation. Our objectives were also to determine if drugs used in other species as well as procaine induce hyperactivation in stallion sperm and to evaluate biochemical changes such as protein tyrosine phophorylation.</p>

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<author>Vivani, Leticia</author>

<source></source>

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<title>Polygenic Resistance In The Highly DDT-resistant 91-R Strain Of Drosophila Melanogaster Involves Decreased Penetration, Increased Metabolism And Direct Excretion Of DDT</title>
<link>http://scholarworks.umass.edu/theses/424</link>
<guid isPermaLink="true">http://scholarworks.umass.edu/theses/424</guid>
<pubDate>Tue, 10 Aug 2010 06:19:07 PDT</pubDate>
<description>
	<![CDATA[
	<p>Resistance to dichlorodiphenyltrichloroethane (DDT) in the 91-R strain of Drosophila melanogaster is extremely high compared to the susceptible Canton-S strain (>1500 times). Oxidative detoxification is involved in resistance but is not the only mechanism.  Rates of DDT penetration, metabolism, and excretion were determined radiometrically between resistant 91-R and susceptible Canton-S strains.  Contact penetration was ~1.5-times slower with 91-R flies compared to Canton-S flies. The 91-R strain had 13-fold more cuticular hydrocarbons, possibly resulting in penetration differences. DDT was metabolized ~33-fold more extensively by 91-R than Canton-S resulting in dichlorodiphenyldichloroethane (DDD), two unidentified metabolites and polar conjugates being formed in significantly greater amounts. 91-R also excreted ~5.0 times more DDT and metabolites than Canton-S.  Verapamil pretreatment reduced the LD50 value for 91-R flies topically dosed with DDT by a factor of 10-fold.  Thus, it is likely that the increased excretion by 91-R flies is due to the increased expression of ATP-binding cassette (ABC) transporter genes, including MDR50 (CG8525) that had a 36% higher transcript level by quantitative real time PCR than Canton-S flies. In summary, DDT resistance in 91-R is polyfactorial and includes reduced penetration, increased detoxification and direct excretion.</p>

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<author>Strycharz, Joseph P.</author>

<source></source>

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<title>Examination of Promotor Hypermethylation Patterns in Magnetically Enriched Exfoliated Breast Milk Epithelial Cells</title>
<link>http://scholarworks.umass.edu/theses/392</link>
<guid isPermaLink="true">http://scholarworks.umass.edu/theses/392</guid>
<pubDate>Mon, 05 Apr 2010 12:13:01 PDT</pubDate>
<description>
	<![CDATA[
	<p>Suppression of genes involved in DNA repair, tumor suppression and detoxification through epigenetic modifications has been implicated in the etiology of cancer. As such analysis of promoter methylation patterns in genes frequently down regulated in breast cancer in non-cancerous subjects may serve as an indicator of breast cancer risk.  CpG-island hypermethylation of single genes has been detected in cells isolated from nipple aspirate and ductal lavage, yet both isolation methods yield insufficient cells to complete an extensive analysis on any one donor sample.</p>
<p>As an alternative we have turned to magnetic separation of human mammary epithelial cells from breast milk.  Initial studies with these cells, which are detailed in chapter one, show that a breast milk sample provides sufficient epithelial cells to isolate high quality RNA for gene expression analyses or genomic DNA for methylation analysis of multiple genes. Using quantitative RT-PCR of RNA collected from these samples we detected differences in the mRNA levels for six genes known to be down regulated in breast cancers: BRCA1, p16, CDH1, TMS-1, GSTPi, and SFRP1. Additionally using methyl-specific PCR (MSP) we assayed for a small panel of genes frequently methylated in cancer and found them to be unmethylated in the few breast milk samples examined.  However, given the small number of CpG sites which can be assayed by the MSP technique it is not surprising that methylation was not detected in disease-free subjects.</p>
<p>With methods for collecting breast milk samples and processing them for genetic material established we turned to a more comprehensive study of DNA methylation in larger population of donors which is detailed in chapter two.  Utilizing a highly sensitive and highly quantitative methylation analysis technique known as Pyrosequencing we examined age-related methylation patterns for RASSF1A, TMS-1, CDH1, SFRP1, GSTPi, and CRBP1 in genomic DNA purified from exfoliated epithelial cells magnetically enriched from breast milk (n=111) and whether the protective effects conveyed by early pregnancy could be partly due to decreases in DNA hypermethylation.  Although firm answers about early pregnancy were inconclusive based on our sample pool, this body of work lays down a solid foundation for future studies.</p>

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<author>Wong, Chung M.</author>

<source></source>

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<title>Binary Mixtures of Pyrethroids Interact with Voltage-Sensitive Calcium and Chloride Channels in Isolated Presynaptic Nerve Terminals from Rat Brain</title>
<link>http://scholarworks.umass.edu/theses/201</link>
<guid isPermaLink="true">http://scholarworks.umass.edu/theses/201</guid>
<pubDate>Mon, 15 Dec 2008 07:54:07 PST</pubDate>
<description>
	<![CDATA[
	<p>Select pyrethroid binary mixtures (deltamethrin plus S-bioallethrin, β-cyfluthrin, cypermethrin, and fenpropathrin) elicit a more-than-additive response on L-glutamate release from rat brain synaptosomes that is independent of calcium influx.  Using a variety of chloride channel antagonists, anthracene-9-carboxylic acid (9-AC), rChlorotoxin (ClTx), 4,4’-dintitrostilbene-2,2’-disulfonic acid (DNDS), 5-nitro-2-(3-phenylpropylamino) benzoic acid (NPPB), and picrotoxinin (PTX), we have identified two mechanisms by which pyrethroids may enhance L-glutamate release.  The results from this study indicate that only ClTx and NPPB, at their EC50s (0.1 μM and 70 μM, respectively), significantly increase L-glutamate release when in the presence of our most potent pyrethroid, deltamethrin, at its EC50 (2 x 10-12 M).  When these two antagonists were used in the presence of deltamethrin plus cypermethrin and deltamethrin plus fenpropathrin, a more-than-additive response was elicited at lower concentrations of the binary mixtures.  Likewise, NPPB in the presence of the additive binary mixture, deltamethrin plus tefluthrin, first elicited a more-than-additive response at the 1:10 mixture.  Since both ClTx and NPPB are inhibitors of voltage-gated chloride channels (ClC-2) and calcium-activated chloride channels, our findings suggest that these channels are potential target sites for certain pyrethroids and likely are important in pyrethroid neurotoxicity.</p>

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<author>Hodgdon, Hilliary E.</author>

<source></source>

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