Baskin, Tobias

Loading...
Profile Picture
Email Address
Birth Date
Research Projects
Organizational Units
Job Title
Professor, Department of Biology, College of Natural Sciences
Last Name
Baskin
First Name
Tobias
Discipline
Biology
Expertise
Introduction
Regulation of Plant Morphogenesis During Growth & Development
Plant forms have long delighted artists and naturalists with their variety and beauty. These forms arise through morphogenesis in a process that depends on growth. Cells specify their growth rates in each spatial dimension and these rates are usually different from one another, that is, the growth of plant cells is anisotropic. To build an organ with a defined shape, the plant must control precisely the direction of maximal expansion and the magnitude of expansion anisotropy. Understanding the mechanisms whereby plant cells govern growth anisotropy is the crux of my research.
To unearth these mechanisms I am digging in three types of terrain. The first is to understand how cell division and expansion are regulated coordinately. Cell division supplies the plant with building blocks whereas cell expansion determines the shape of the blocks and hence of the whole structure. These processes must be coordinated precisely for morphogenesis to succeed, but those interested in division have typically ignored expansion, and vice versa. My laboratory is quantifying the spatial profiles of cell expansion and division at high spatio-temporal resolution and studying how these change in different environments or in different genetic backgrounds. As part of this effort, I collaborated with a computer scientist to develop a novel image processing routine allowing growth profiles to be measured algorithmically.
The second terrain is the role of the cytoskeleton in regulating anisotropic expansion. For years, the cytoskeleton has been known to be important for morphogenesis by virtue of the aberrant morphology that results when the cytoskeleton is disrupted by chemical inhibitors. But how does the cytoskeleton act? This question requires more than inhibitors to answer. My laboratory has isolated mutants of arabidopsis in which root morphology is aberrant and we are using those to identify proteins that make up the pathway for the control of organ shape. Additionally, we have designed a novel in vitro assay specifically for cortical microtubules, where there behavior can be studied readily and the function of putative players tested directly.
The third terrain is the cell wall, the ultimate regulator of cell and organ shape. Cells can expand anisotropically only when the cell wall is mechanically anisotropic. The mechanical anisotropy is provided by cellulose microfibrils, long polymers of glucose crystallized into microfibrils with the tensile strength of steel; however, it is not known how cellulose alignment is controlled. In addition to the mutational approach mentioned above, my laboratory uses several approaches to study the ultrastructure of the cell wall, including quantitative polarized-light microscopy, field-emission scanning electron microscopy, and atomic force microscopy. The overall goal here is to uncover how anisotropic wall yielding is conditioned by the structural elements of the cell wall.
Name

Search Results

Now showing 1 - 10 of 44
  • PublicationOpen Access
    Directional cell expansion - turning toward actin
    (2005-01) Bannigan, A; Baskin, Tobias
  • PublicationOpen Access
  • PublicationOpen Access
    Identification of a cellulose synthase-associated protein required for cellulose biosynthesis
    (2010-01) Gu, Y; Kaplinsky, N; Baskin, Tobias; Bringmann, M; Cobb, A; Carroll, A; Sampathkumar, A; Persson, S; Somerville, CR
    Cellulose synthase-interactive protein 1 (CSI1) was identified in a two-hybrid screen for proteins that interact with cellulose synthase (CESA) isoforms involved in primary plant cell wall synthesis. CSI1 encodes a 2,150-amino acid protein that contains 10 predicted Armadillo repeats and a C2 domain. Mutations in CSI1 cause defective cell elongation in hypocotyls and roots and reduce cellulose content. CSI1 is associated with CESA complexes, and csi1 mutants affect the distribution and movement of CESA complexes in the plasma membrane.
  • PublicationOpen Access
    Disorganization of cortical microtubules stimulates tangential expansion and reduces the uniformity of cellulose microfibril alignment among cells in the root of arabidopsis
    (2004) Baskin, Tobias; Beemster, Gerrit T.S.; Judy-March, Jan E.; Marga, Francoise
    To test the role of cortical microtubules in aligning cellulose microfibrils and controlling anisotropic expansion, we exposed Arabidopsis thaliana roots to moderate levels of the microtubule inhibitor, oryzalin. After 2 d of treatment, roots grow at approximately steady state. At that time, the spatial profiles of relative expansion rate in length and diameter were quantified, and roots were cryofixed, freeze-substituted, embedded in plastic, and sectioned. The angular distribution of microtubules as a function of distance from the tip was quantified from antitubulin immunofluorescence images. In alternate sections, the overall amount of alignment among microfibrils and their mean orientation as a function of position was quantified with polarized-light microscopy. The spatial profiles of relative expansion show that the drug affects relative elongation and tangential expansion rates independently. The microtubule distributions averaged to transverse in the growth zone for all treatments, but on oryzalin the distributions became broad, indicating poorly organized arrays. At a subcellular scale, cellulose microfibrils in oryzalin-treated roots were as well aligned as in controls; however, the mean alignment direction, while consistently transverse in the controls, was increasingly variable with oryzalin concentration, meaning that microfibril orientation in one location tended to differ from that of a neighboring location. This conclusion was confirmed by direct observations of microfibrils with field-emission scanning electron microscopy. Taken together, these results suggest that cortical microtubules ensure microfibrils are aligned consistently across the organ, thereby endowing the organ with a uniform mechanical structure
  • PublicationOpen Access
    The impact of mannose and other carbon sources on the elongation and diameter of the primary root of Arabidopsis thaliana
    (2001) Baskin, Tobias; Remillong, Elizabeth L.; Wilson, Jan E.
    To determine to what extent plant growth and morphology are sensitive to perturbed carbon metabolism, we grew Arabidopsis thaliana L. (Heynh.) seedlings for 10 d in the presence of various carbon compounds and measured the length and diameter of the primary root. Compounds fell into three groups based on their effect on root length: group one supported about as much elongation as sucrose; group two supported about the same elongation as occurred in the absence of sugar; and group three reduced or even eliminated root growth. No compound changed the diameter of the root notably, although there was a weak, positive correlation between root diameter and elongation. To investigate the inhibition of root elongation by mannose, we transplanted seedlings on to test media and measured primary root growth over the subsequent 2 d. Mannose scarcely changed root diameter, in contrast to 2-deoxyglucose, which caused marked swelling, similar in extent to that caused by tunicamycin. Mannose inhibited elongation rate by 90% within 24 h and required a further 2 d to reduce the elongation rate to zero, with the saturating dose being 30 mM in the presence of 3% sucrose and 0.3 mM in its absence. By contrast, cell production rate was little affected over the first 2 d of treatment. The inhibition of elongation by mannose was not reproduced by two sugar analogs that cannot be phosphorylated on carbon six, was not affected by manipulating phosphate levels in the medium, and was largely prevented by simultaneous treatment with either 30 mM mannoheptulose, 1 mM glucose, or 56 mM fructose. These results suggest that mannose inhibits root elongation via hexokinase-mediated sugar signaling
  • PublicationOpen Access
    Measurement of diffusion within the cell wall in living roots of Arabidopsis thaliana
    (2007-01) Kramer, EM; Frazer, NL; Baskin, Tobias
  • PublicationOpen Access
    A conserved role for kinesin-5 in plant mitosis
    (2007-01) Bannigan, A; Scheible, WR; Baskin, Tobias; Lukowitz, W; Fagerstrom, C; Wadsworth, P; Somerville, CI
  • PublicationOpen Access
    Regulation of growth anisotropy in well-watered and water-stressed maize roots. II. Role of cortical microtubules and cellulose microfibrils
    (1999) Baskin, Tobias; Meekes, Herman T.H.M; Liang, Benjamin M.; Sharp, Robert E.
    We tested the hypothesis that the degree of anisotropic expansion of plant tissues is controlled by the degree of alignment of cortical microtubules or cellulose microfibrils. Previously, for the primary root of maize (Zea mays L.), we quantified spatial profiles of expansion rate in length, radius, and circumference and the degree of growth anisotropy separately for the stele and cortex, as roots became thinner with time from germination or in response to low water potential (B.M. Liang, A.M. Dennings, R.E. Sharp, T.I. Baskin [1997] Plant Physiol 115:101–111). Here, for the same material, we quantified microtubule alignment with indirect immunofluorescence microscopy and microfibril alignment throughout the cell wall with polarized-light microscopy and from the innermost cell wall layer with electron microscopy. Throughout much of the growth zone, mean orientations of microtubules and microfibrils were transverse, consistent with their parallel alignment specifying the direction of maximal expansion rate (i.e. elongation). However, where microtubule alignment became helical, microfibrils often made helices of opposite handedness, showing that parallelism between these elements was not required for helical orientations. Finally, contrary to the hypothesis, the degree of growth anisotropy was not correlated with the degree of alignment of either microtubules or microfibrils. The mechanisms plants use to specify radial and tangential expansion rates remain uncharacterized.
  • PublicationOpen Access
    Gravitropism of Arabidopsis thaliana Roots Requires the Polarization of PIN2 toward the Root Tip in Meristematic Cortical Cells
    (2010-01) Rahman, A; Takahashi, M; Baskin, Tobias; Shibasaki, K; Wu, SA; Inaba, T; Tsurumi, S
    In the root, the transport of auxin from the tip to the elongation zone, referred to here as shootward, governs gravitropic bending. Shootward polar auxin transport, and hence gravitropism, depends on the polar deployment of the PIN-FORMED auxin efflux carrier PIN2. In Arabidopsis thaliana, PIN2 has the expected shootward localization in epidermis and lateral root cap; however, this carrier is localized toward the root tip (rootward) in cortical cells of the meristem, a deployment whose function is enigmatic. We use pharmacological and genetic tools to cause a shootward relocation of PIN2 in meristematic cortical cells without detectably altering PIN2 polarization in other cell types or PIN1 polarization. This relocation of cortical PIN2 was negatively regulated by the membrane trafficking factor GNOM and by the regulatory A1 subunit of type 2-A protein phosphatase (PP2AA1) but did not require the PINOID protein kinase. When GNOM was inhibited, PINOID abundance increased and PP2AA1 was partially immobilized, indicating both proteins are subject to GNOM-dependent regulation. Shootward PIN2 specifically in the cortex was accompanied by enhanced shootward polar auxin transport and by diminished gravitropism. These results demonstrate that auxin flow in the root cortex is important for optimal gravitropic response.