Baskin, Tobias

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Professor, Department of Biology, College of Natural Sciences
Last Name
Baskin
First Name
Tobias
Discipline
Biology
Expertise
Introduction
Regulation of Plant Morphogenesis During Growth & Development
Plant forms have long delighted artists and naturalists with their variety and beauty. These forms arise through morphogenesis in a process that depends on growth. Cells specify their growth rates in each spatial dimension and these rates are usually different from one another, that is, the growth of plant cells is anisotropic. To build an organ with a defined shape, the plant must control precisely the direction of maximal expansion and the magnitude of expansion anisotropy. Understanding the mechanisms whereby plant cells govern growth anisotropy is the crux of my research.
To unearth these mechanisms I am digging in three types of terrain. The first is to understand how cell division and expansion are regulated coordinately. Cell division supplies the plant with building blocks whereas cell expansion determines the shape of the blocks and hence of the whole structure. These processes must be coordinated precisely for morphogenesis to succeed, but those interested in division have typically ignored expansion, and vice versa. My laboratory is quantifying the spatial profiles of cell expansion and division at high spatio-temporal resolution and studying how these change in different environments or in different genetic backgrounds. As part of this effort, I collaborated with a computer scientist to develop a novel image processing routine allowing growth profiles to be measured algorithmically.
The second terrain is the role of the cytoskeleton in regulating anisotropic expansion. For years, the cytoskeleton has been known to be important for morphogenesis by virtue of the aberrant morphology that results when the cytoskeleton is disrupted by chemical inhibitors. But how does the cytoskeleton act? This question requires more than inhibitors to answer. My laboratory has isolated mutants of arabidopsis in which root morphology is aberrant and we are using those to identify proteins that make up the pathway for the control of organ shape. Additionally, we have designed a novel in vitro assay specifically for cortical microtubules, where there behavior can be studied readily and the function of putative players tested directly.
The third terrain is the cell wall, the ultimate regulator of cell and organ shape. Cells can expand anisotropically only when the cell wall is mechanically anisotropic. The mechanical anisotropy is provided by cellulose microfibrils, long polymers of glucose crystallized into microfibrils with the tensile strength of steel; however, it is not known how cellulose alignment is controlled. In addition to the mutational approach mentioned above, my laboratory uses several approaches to study the ultrastructure of the cell wall, including quantitative polarized-light microscopy, field-emission scanning electron microscopy, and atomic force microscopy. The overall goal here is to uncover how anisotropic wall yielding is conditioned by the structural elements of the cell wall.
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Now showing 1 - 10 of 44
  • Publication
    A conserved role for kinesin-5 in plant mitosis
    (2007-01) Bannigan, A; Scheible, WR; Baskin, Tobias; Lukowitz, W; Fagerstrom, C; Wadsworth, P; Somerville, CI
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    Regulation of growth anisotropy in well-watered and water-stressed maize roots. II. Role of cortical microtubules and cellulose microfibrils
    (1999) Baskin, Tobias; Meekes, Herman T.H.M; Liang, Benjamin M.; Sharp, Robert E.
    We tested the hypothesis that the degree of anisotropic expansion of plant tissues is controlled by the degree of alignment of cortical microtubules or cellulose microfibrils. Previously, for the primary root of maize (Zea mays L.), we quantified spatial profiles of expansion rate in length, radius, and circumference and the degree of growth anisotropy separately for the stele and cortex, as roots became thinner with time from germination or in response to low water potential (B.M. Liang, A.M. Dennings, R.E. Sharp, T.I. Baskin [1997] Plant Physiol 115:101–111). Here, for the same material, we quantified microtubule alignment with indirect immunofluorescence microscopy and microfibril alignment throughout the cell wall with polarized-light microscopy and from the innermost cell wall layer with electron microscopy. Throughout much of the growth zone, mean orientations of microtubules and microfibrils were transverse, consistent with their parallel alignment specifying the direction of maximal expansion rate (i.e. elongation). However, where microtubule alignment became helical, microfibrils often made helices of opposite handedness, showing that parallelism between these elements was not required for helical orientations. Finally, contrary to the hypothesis, the degree of growth anisotropy was not correlated with the degree of alignment of either microtubules or microfibrils. The mechanisms plants use to specify radial and tangential expansion rates remain uncharacterized.
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    Aberrant cell plate formation in the Arabidopsis thaliana microtubule organization 1 mutant
    (2005-01) Eleftheriou, EP; Baskin, Tobias; Hepler, PK
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    Directional cell expansion - turning toward actin
    (2005-01) Bannigan, A; Baskin, Tobias
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    Motion flow estimation from image sequences with applications to biological growth and motility
    (2006-01) Dong, Gang; Baskin, Tobias; Palaniappan, Kannappan
    In this paper, a new method for motion flow estimation that considers errors in all the derivative measurements is presented. Based on the total least squares (TLS) model, we accurately estimate the motion flow in the general noise case by combining noise model (in form of covariance matrix) with a parametric motion model. The proposed algorithm is tested on two different types of biological motion, a growing plant root and a gastrulating embryo, with sequences obtained microscopically. The local, instantaneous velocity field estimated by the algorithm reveals the behavior of the underlying cellular elements.
  • Publication
    lnhibitors of protein kinases and phosphatases alter root morphology and disorganize cortical microtubules
    (1997) Baskin, Tobias; Wilson, Jan E.
    To investigate molecular mechanisms controlling plant morphogenesis, we examined the morphology of primary roots of Arabidopsis thaliana and the organization of cortical microtubules in response to inhibitors of serine/threonine protein phosphatases and kinases. We found that cantharidin, an inhibitor of types 1 and 2A protein phosphatases, as previously reported for okadaic acid and calyculin A (R.D. Smith, J.E. Wilson, J.C. Walker, T.I. Baskin 119941 Planta 194: 51 6-524), inhibited elongation and stimulated radial expansion. Of the protein kinase inhibitors tested, chelerythrine, 6-dimethylaminopurine, H-89, K252a, ML-9, and staurosporine all inhibited elongation, but only staurosporine appreciably stimulated radial expansion. To determine the basis for the root swelling, we examined cortical microtubules in semithin sections of material embedded in butyl-methyl-methacrylate. Chelerythrine and 1 O0 nM okadaic acid, which inhibited elongation without causing swelling, did not change the appearance of cortical arrays, but calyculin A, cantharidin, and staurosporine, which caused swelling, disorganized cortical microtubules. The stability of the microtubules in the aberrant arrays was not detectably different from those in control arrays, as judged by similar sensitivity to depolymerization by cold or oryzalin. These results identify protein phosphorylation and dephosphorylation as requirements in one or more steps that organize the cortical array of microtubules.
  • Publication
    Gravitropism of Arabidopsis thaliana Roots Requires the Polarization of PIN2 toward the Root Tip in Meristematic Cortical Cells
    (2010-01) Rahman, A; Takahashi, M; Baskin, Tobias; Shibasaki, K; Wu, SA; Inaba, T; Tsurumi, S
    In the root, the transport of auxin from the tip to the elongation zone, referred to here as shootward, governs gravitropic bending. Shootward polar auxin transport, and hence gravitropism, depends on the polar deployment of the PIN-FORMED auxin efflux carrier PIN2. In Arabidopsis thaliana, PIN2 has the expected shootward localization in epidermis and lateral root cap; however, this carrier is localized toward the root tip (rootward) in cortical cells of the meristem, a deployment whose function is enigmatic. We use pharmacological and genetic tools to cause a shootward relocation of PIN2 in meristematic cortical cells without detectably altering PIN2 polarization in other cell types or PIN1 polarization. This relocation of cortical PIN2 was negatively regulated by the membrane trafficking factor GNOM and by the regulatory A1 subunit of type 2-A protein phosphatase (PP2AA1) but did not require the PINOID protein kinase. When GNOM was inhibited, PINOID abundance increased and PP2AA1 was partially immobilized, indicating both proteins are subject to GNOM-dependent regulation. Shootward PIN2 specifically in the cortex was accompanied by enhanced shootward polar auxin transport and by diminished gravitropism. These results demonstrate that auxin flow in the root cortex is important for optimal gravitropic response.