Submissions from 2009
Environmental Sequence Data from the Sargasso Sea Reveal That the Characteristics of Genome Reduction in Prochlorococcus Are Not a Harbinger for an Escalation in Genetic Drift, JH Hu and JL Blanchard
Regulated transcription of the Saccharomyces cerevisiae phosphatidylinositol biosynthetic gene, PIS1, yields pleiotropic effects on phospholipid synthesis, NM Jani and JM Lopes
PilR, a Transcriptional Regulator for Pilin and Other Genes Required for Fe(III) Reduction in Geobacter sulfurreducens, K Juarez, BC Kim, K Nevin, L Olvera, G Reguera, DR Lovley, and BA Methe
Unraveling the Secrets of Regulating Mitochondrial DNA Replication, MM Klingbeil and TA Shapiro
Diversity of promoter elements in a Geobacter sulfurreducens mutant adapted to disruption in electron transfer, J Krushkal, C Leang, J Barbe, YH Qu, B Yan, M Puljic, R Adkins, and D Lovley
Bioinformatic analysis of gene regulation in Geobacter sulfurreducens, J Krushkal, YH Qu, P Brown, S Sontineni, T Ueki, K Juarez, C Leang, E Merino, J Peeples, JF Barbe, RM Adkins, and DR Lovley
Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens, C Leang, J Krushkal, T Ueki, M Puljic, J Sun, K Juarez, C Nunez, G Reguera, R DiDonato, B Postier, RM Adkins, and DR Lovley
"Doubly Selective" Antimicrobial Polymers: How Do They Differentiate between Bacteria?, Karen Lienkamp, Kushi-Nidhi Kumar, Abhigyan Som, Klaus Nüsslein, and Gregory N. Tew
Suppression of constitutive SOS expression by recA4162 (I298V) and recA4164 (L126V) requires UvrD and RecX in Escherichia coli K-12, JE Long, N Renzette, and SJ Sandler
Fast Disinfecting Antimicrobial Surfaces, Ahmad E. Madkour, Jeffrey M. Dabkowski, Klaus Nüsslein, and Gregory N. Tew
Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation, PJ Mouser, DE Holmes, LA Perpetua, R DiDonato, B Postier, A Liu, and DR Lovley
Influence of Heterogeneous Ammonium Availability on Bacterial Community Structure and the Expression of Nitrogen Fixation and Ammonium Transporter Genes during in Situ Bioremediation of Uranium-Contaminated Groundwater, PJ Mouser, AL N'Guessan, H Elifantz, DE Holmes, KH Williams, MJ Wilkins, PE Long, and DR Lovley
GSEL Version 2, an Online Genome-Wide Query System of Operon Organization and Regulatory Sequence Elements of Geobacter sulfurreducens, YH Qu, P Brown, JF Barbe, M Puljic, E Merino, RM Adkins, DR Lovley, and J Krushkal
Cyclic voltammetry of biofilms of wild type and mutant Geobacter sulfurreducens on fuel cell anodes indicates possible roles of OmcB, OmcZ, type IV pili, and protons in extracellular electron transfer, H Richter, KP Nevin, HF Jia, DA Lowy, DR Lovley, and LM Tender
Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens, C Risso, J Sun, K Zhuang, R Mahadevan, R Deboy, W Ismail, S Shrivastava, H Huot, S Kothari, S Daugherty, O Bui, CH Schilling, DR Lovley, and BA Methe
Hydrogenotrophic Denitrification and Perchlorate Reduction in Ion Exchange Brines Using Membrane Biofilm Reactors, AK Sahu, T Conneely, K Nusslein, and SJ Ergas
Biological Perchlorate Reduction in Packed Bed Reactors Using Elemental Sulfur, AK Sahu, T Conneely, KR Nusslein, and SJ Ergas
Genome-scale constraint-based modeling of Geobacter metallireducens, J Sun, B Sayyar, JE Butler, P Pharkya, TR Fahland, I Famili, CH Schilling, DR Lovley, and R Mahadevan
Abundances of Hyperthermophilic Autotrophic Fe(III) Oxide Reducers and Heterotrophs in Hydrothermal Sulfide Chimneys of the Northeastern Pacific Ocean, HC Ver Eecke, DS Kelley, and JF Holden
Occurrence of Chlamydia trachomatis and Chlamydia pneumoniae in paediatric respiratory infections, WC Webley, Y Tilahun, K Lay, K Patel, ES Stuart, C Andrzejewski, and PS Salva
Proteogenomic Monitoring of Geobacter Physiology during Stimulated Uranium Bioremediation, MJ Wilkins, NC VerBerkmoes, KH Williams, SJ Callister, PJ Mouser, H Elifantz, AL N'Guessan, BC Thomas, CD Nicora, MB Shah, P Abraham, MS Lipton, DR Lovley, RL Hettich, PE Long, and JF Banfield
Selection of a variant of Geobacter sulfurreducens with enhanced capacity for current production in microbial fuel cells, HN Yi, KP Nevin, BC Kim, AE Franks, A Klimes, LM Tender, and DR Lovley
Submissions from 2008
Relational learning in children with deafness and cochlear implants, AC Almeida-Verdu, EM Huziwara, DG De Souza, JC De Rose, M Cecilia-Bevilacqua, J Lopes, CO Alves, and WJ McIlvane
XthA (Exonuclease III) regulates loading of RecA onto DNA substrates in log phase Escherichia coli cells, RC Centore, R Lestini, and SJ Sandler
Stem-Loop Silencing Reveals that a Third Mitochondrial DNA Polymerase, POLID, Is Required for Kinetoplast DNA Replication in Trypanosomes, J Chandler, AV Vandoros, B Mozeleski, and MM Klingbeil
Quantifying expression of a dissimilatory (bi) sulfite reductase gene in petroleum-contaminated marine Harbor Sediments, KJ Chin, ML Sharma, LA Russell, KR O'Neill, and DR Lovley
Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor, YHR Ding, KK Hixson, MA Aklujkar, MS Lipton, RD Smith, DR Lovley, and T Mester
Fluorescent properties of c-type cytochromes reveal their potential role as an extracytoplasmic electron sink in Geobacter sulfurreducens, A Esteve-Nunez, J Sosnik, P Visconti, and DR Lovley
Constraints on anaerobic respiration in the hyperthermophilic archaea Pyrobaculum islandicum and Pyrobaculum aerophilum, Lawrence F. Feinberg, R. Srikanth, Richard W. Vachet, and James F. Holden
A new model linking atmospheric methane sources to Pleistocene glaciation via methanogenesis in sedimentary basins, MJ Formolo, JM Salacup, ST Petsch, AM Martini, and K Nusslein
Synthetic Mimic of Antimicrobial Peptide with Nonmembrane-Disrupting Antibacterial Properties, GJ Gabriel, AE Madkour, JM Dabkowski, CF Nelson, K Nusslein, and GN Tew
RecA-mediated SOS induction requires an extended filament conformation but no ATP hydrolysis, MC Gruenig, N Renzette, E Long, S Chitteni-Pattu, RB Inman, MM Cox, and SJ Sandler
Genome-wide gene expression patterns and growth requirements suggest that Pelobacter carbinolicus reduces Fe(III) indirectly via sulfide production, SA Haveman, RJ DiDonato, L Villanueva, ES Shelobolina, BL Postier, B Xu, A Liu, and DR Lovley
Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes, DE Holmes, T Mester, RA O'Neil, LA Perpetua, MJ Larrahondo, R Glaven, ML Sharma, JE Ward, KP Nevin, and DR Lovley
Geobacter sulfurreducens strain engineered for increased rates of respiration, M Izallalen, R Mahadevan, A Burgard, B Postier, R Didonato, J Sun, CH Schilling, and DR Lovley
Transcription regulation of the Saccharomyces cerevisiae PIS1 gene by inositol and the pleiotropic regulator, Ume6p, NM Jani and JM Lopes
Characterization of extracellular minerals produced during dissimilatory Fe(III) and U(VI) reduction at 100 degrees C by Pyrobaculum islandicum, K Kashefi, BM Moskowitz, and DR Lovley
Growth of thermophilic and hyperthermophilic Fe (III)-reducing microorganisms on a ferruginous smectite as the sole electron acceptor, K Kashefi, ES Shelobolina, WC Elliott, and DR Lovley
Investigation of direct vs. indirect involvement of the c-type cytochrome MacA in Fe(III) reduction by Geobacter sulfurreducens, BC Kim and DR Lovley
Insights into genes involved in electricity generation in Geobacter sulfurreducens via whole genome microarray analysis of the OmcF-deficient mutant (vol 73, pg 70, 2008), BC Kim, BL Postier, RJ Didonato, SK Chaudhuri, KR Nevin, and DR Lovley
Growth with high planktonic biomass in Shewanella oneidensis fuel cells, M Lanthier, KB Gregory, and DR Lovley
Differential Requirements of Two recA Mutants for Constitutive SOS Expression in Escherichia coli K-12, JE Long, N Renzette, RC Centore, and SJ Sandler
Extracellular electron transfer: wires, capacitors, iron lungs, and more, DR Lovley
The microbe electric: conversion of organic matter to electricity, DR Lovley
The degree of redundancy in metabolic genes is linked to mode of metabolism, R Mahadevan and DR Lovley
Biogeochemistry of the Forest City Basin coalbed methane play, J McIntosh, A Martini, S Petsch, R Huang, and K Nusslein
Power output and columbic efficiencies from biofilms of Geobacter sulfurreducens comparable to mixed community microbial fuel cells, KP Nevin, H Richter, SF Covalla, JP Johnson, TL Woodard, AL Orloff, H Jia, M Zhang, and DR Lovley
Sustained removal of uranium from contaminated groundwater following stimulation of dissimilatory metal reduction, AL N'Guessan, HA Vrionis, CT Resch, PE Long, and DR Lovley
GEOC 35-Biogeochemical differences in pilot-scale bioremediation treatment plots undergoing iron reduction or sulfate reduction in a uranium-contaminated aquifer, AL N'Guessan, KH Williams, S Yabusaki, PE Long, and DR Lovley
Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation, RA O'Neil, DE Holmes, MV Coppi, LA Adams, MJ Larrahondo, JE Ward, KP Nevin, TL Woodard, HA Vrionis, AL N'Guessan, and DR Lovley
Uptake and intra-inclusion accumulation of exogenous immunoglobulin by Chlamydia-infected cells, David V. Pollack, Nancy L. Croteau, and Elizabeth S. Stuart
Benefits of in-situ synthesized microarrays for analysis of gene expression in understudied microorganisms, B Postier, R DiDonato, KP Nevin, A Liu, B Frank, D Lovley, and BA Methe
Requirements for ATP binding and hydrolysis in RecA function in Escherichia coli, N Renzette and SJ Sandler
Electricity generation by Geobacter sulfurreducens attached to gold electrodes, Hanno Richter, Kevin McCarthy, Kelly P. Nevin, Jessica P. Johnson, Vincent M. Rotello, and Derek R. Lovley
Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation, C Risso, BA Methe, H Elifantz, DE Holmes, and DR Lovley
Elucidation of an alternate isoleucine biosynthesis pathway in Geobacter sulfurreducens, C Risso, SJ Van Dien, A Orloff, DR Lovley, and MV Coppi
Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens, D Segura, R Mahadevan, K Juarez, and DR Lovley
Geobacter uraniireducens sp nov., isolated from subsurface sediment undergoing uranium bioremediation, ES Shelobolina, HA Vrionis, RH Findlay, and DR Lovley
Recombinant gas vesicles from Halobacterium sp. displaying SIV peptides demonstrate biotechnology potential as a pathogen peptide delivery vehicle, M Sremac and ES Stuart
Graphite electrode as a sole electron donor for reductive dechlorination of tetrachlorethene by Geobacter lovleyi, SM Strycharz, TL Woodard, JP Johnson, KP Nevin, RA Sanford, FE Loffler, and DR Lovley
Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function, Hao T. Tran, Julia Krushkal, Frances M. Antommattei, Derek R. Lovley, and Robert M. Weis
Quantification of Desulfovibrio vulgaris dissimilatory sulfite reductase gene expression during electron donor- and electron acceptor-limited growth, L Villanueva, SA Haveman, ZM Summers, and DR Lovley
Submissions from 2007
Steady state protein levels in Geobacter metallireducens grown with iron (III) citrate or nitrate as terminal electron acceptor, AJ Ahrendt, SL Tollaksen, C Lindberg, WH Zhu, JR Yates, KP Nevin, G Babnigg, DR Lovley, and CS Giometti
Rapid Changes in Gene Expression Dynamics in Response to Superoxide Reveal SoxRS-Dependent and Independent Transcriptional Networks, Jeffrey L. Blanchard, Wei-Yun Wholey, Erin M. Conlon, and Pablo J. Pomposiello
Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site, JE Butler, Q He, KP Nevin, ZL He, JZ Zhou, and DR Lovley
UvrD limits the number and intensities of RecA-Green fluorescent protein structures in Escherichia coli K-12, RC Centore and SJ Sandler
Involvement of Geobacter sulfurreducens SfrAB in acetate metabolism rather than intracellular, respiration-linked Fe(III) citrate reduction, MV Coppi, RA O'Neil, C Leang, F Kaufmann, BA Methe, KP Nevin, TL Woodard, A Liu, and DR Lovley
Arsenic sequestration by nitrate respiring microbial communities in urban lake sediments, BP Gibney and K Nusslein
Comparative bacterial diversity in recent Hawaiian volcanic deposits of different ages, V Gomez-Alvarez, GM King, and K Nusslein
Prolixibacter bellariivorans gen nov, sp nov, a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell, DE Holmes, KP Nevin, TL Woodard, AD Peacock, and DR Lovley
Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments, DE Holmes, RA O'Neil, HA Vrionis, LA N'Guessan, I Ortiz-Bernad, MJ Larrahondo, LA Adams, JA Ward, JS Nicoll, KP Nevin, MA Chavan, JP Johnson, PE Long, and DR Lovley
Genome-wide expression profiling in Geobacter sulfurreducens: identification of Fur and RpoS transcription regulatory sites in a rel(Gsu) mutant, J Krushkal, B Yan, LN DiDonato, M Puljic, KP Nevin, TL Woodard, RM Adkins, BA Methe, and DR Lovley
A hand-off mechanism for primosome assembly in replication restart., M Lopper, R Boonsombat, SJ Sandler, and JL Keck
Reclassification of Trichlorobacter thiogenes as Geobacter thiogenes comb. nov., KP Nevin, DE Holmes, TL Woodard, SF Covalla, and DR Lovley
Evidence that OmcB and OmpB of Geobacter sulfurreducens are outer membrane surface proteins, XL Qian, G Reguera, T Mester, and DR Lovley
Possible nonconductive role of Geobacter sulfurreducens pilus nanowires in biofilm formation, G Reguera, RB Pollina, JS Nicoll, and DR Lovley
DinI and RecX modulate RecA-DNA structures in Escherichia coli K-12, N Renzette, N Gumlaw, and SJ Sandler
Lack of electricity production by Pelobacter carbinolicus indicates that the capacity for Fe(III) oxide reduction does not necessarily confer electron transfer ability to fuel cell anodes, H Richter, M Lanthier, KP Nevin, and DR Lovley
Geobacter pickeringii sp nov., Geobacter argillaceus sp nov and Pelosinus fermentans gen. nov., sp nov., isolated from subsurface kaolin lenses, ES Shelobolina, KP Nevin, JD Blakeney-Hayward, CV Johnsen, TW Plaia, P Krader, T Woodard, DE Holmes, CG VanPraagh, and DR Lovley
Importance of c-type cytochromes for U(VI) reduction by Geobacter sulfurreducens, Evgenya S. Shelobolina, Maddalena V. Coppi, Anton A. Korenevsky, Laurie N. DiDonato, Sara A. Sullivan, Hiromi Konishi, Huifang Xu, Ching Leang, Jessica E. Butler, Byoung-Chan Kim, and Derek R. Lovley
Heat-shock sigma factor RpoH from Geobacter sulfurreducens, T Ueki and DR Lovley
Responses of rhizobia to desiccation in relation to osmotic stress, oxygen, and temperature, JAC Vriezen, FJ de Bruijn, and K Nusslein
Salinity constraints on subsurface archaeal diversity and methanogenesis in sedimentary rock rich in organic matter (vol 73, pg 4171, 2007), PJ Waldron, ST Petsch, AM Martini, and K Nusslein
Chronic respiratory disease in children: The prevalence of Chlamydia and Mycoplasma, WC Webley, K Lay, ES Stuart, C Andrzejewski, and PS Salva
The bronchial lavage of pediatric patients with asthma contains infectious Chlamlydia (vol 171, pg 1083, 2005), WC Webley, PS Salva, C Andrzejewski, F Cirino, CA West, Y Tilahun, and ES Stuart
Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens, B Yan, DR Lovley, and J Krushkal
Characterization of malate dehydrogenase from the hyperthermophilic archaeon Pyrobaculum islandicum, LJ Yennaco, YJ Hu, and JF Holden
Submissions from 2006
A novel dnaC mutation that suppresses priB rep mutant phenotypes in Escherichia coli K-12, R Boonsombat, SP Yeh, A Milne, and SJ Sandler
Genetic characterization of a single bifunctional enzyme for fumarate reduction and succinate oxidation in Geobacter sulfurreducens and engineering of fumarate reduction in Geobacter metallireducens, JE Butler, RH Glaven, A Esteve-Nunez, C Nunez, ES Shelobolina, DR Bond, and DR Lovley
Detection of Chlamydia in the peripheral blood cells of normal donors using in vitro culture, immunofluorescence microscopy and flow cytometry techniques (vol 6, pg 23, 2006), F Cirino, WC Webley, C West, NL Croteau, C Andrzejewski, and ES Stuart
Microbially induced cementation to control sand response to undrained shear, JT DeJong, MB Fritzges, and K Nusslein
Role of Rel(Gsu) in stress response and Fe(III) reduction in Geobacter sulfurreducens, LN DiDonato, SA Sullivan, BA Methe, KP Nevin, R England, and DR Lovley
The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions, YHR Ding, KK Hixson, CS Giometti, A Stanley, A Esteve-Nunez, T Khare, SL Tollaksen, WH Zhu, JN Adkins, MS Lipton, RD Smith, T Mester, and DR Lovley
Characterization of dissimilatory Fe(III) versus NO3- reduction in the hyperthermophilic archaeon Pyrobaculum aerophilum, LF Feinberg and JF Holden
Characterization of dissimilatory Fe(III) versus NO3- reduction in the hyperthermophilic archaeon Pyrobaculum aerophilum (vol 188, pg 525, 2006), LF Feinberg and JF Holden
c-Type Cytochromes in Pelobacter carbinolicus, SA Haveman, DE Holmes, YHR Ding, JE Ward, RJ DiDonato, and DR Lovley
Microarray and genetic analysis of electron transfer to electrodes in Geobacter sulfurreducens, DE Holmes, SK Chaudhuri, KP Nevin, T Mehta, BA Methe, A Liu, JE Ward, TL Woodard, J Webster, and DR Lovley
Citric acid cycle in the hyperthermophilic archaeon Pyrobaculum islandicum grown autotrophically, heterotrophically, and mixotrophically with acetate, YJ Hu and JF Holden
Distribution of extensive nifH gene diversity across physical soil microenvironments, JA Izquierdo and K Nusslein
Differential protein expression in the metal-reducing bacterium Geobacter sulfurreducens strain PCA grown with fumarate or ferric citrate, T Khare, A Esteve-Nunez, KP Nevin, WH Zhu, JR Yates, D Lovley, and CS Giometti