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Submissions from 2008

RecA-mediated SOS induction requires an extended filament conformation but no ATP hydrolysis, MC Gruenig, N Renzette, E Long, S Chitteni-Pattu, RB Inman, MM Cox, and SJ Sandler

Genome-wide gene expression patterns and growth requirements suggest that Pelobacter carbinolicus reduces Fe(III) indirectly via sulfide production, SA Haveman, RJ DiDonato, L Villanueva, ES Shelobolina, BL Postier, B Xu, A Liu, and DR Lovley

Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes, DE Holmes, T Mester, RA O'Neil, LA Perpetua, MJ Larrahondo, R Glaven, ML Sharma, JE Ward, KP Nevin, and DR Lovley

Geobacter sulfurreducens strain engineered for increased rates of respiration, M Izallalen, R Mahadevan, A Burgard, B Postier, R Didonato, J Sun, CH Schilling, and DR Lovley

Transcription regulation of the Saccharomyces cerevisiae PIS1 gene by inositol and the pleiotropic regulator, Ume6p, NM Jani and JM Lopes

Characterization of extracellular minerals produced during dissimilatory Fe(III) and U(VI) reduction at 100 degrees C by Pyrobaculum islandicum, K Kashefi, BM Moskowitz, and DR Lovley

Growth of thermophilic and hyperthermophilic Fe (III)-reducing microorganisms on a ferruginous smectite as the sole electron acceptor, K Kashefi, ES Shelobolina, WC Elliott, and DR Lovley

Investigation of direct vs. indirect involvement of the c-type cytochrome MacA in Fe(III) reduction by Geobacter sulfurreducens, BC Kim and DR Lovley

Insights into genes involved in electricity generation in Geobacter sulfurreducens via whole genome microarray analysis of the OmcF-deficient mutant, BC Kim, BL Postier, RJ DiDonato, SK Chaudhuri, KP Nevin, and DR Lovley

Insights into genes involved in electricity generation in Geobacter sulfurreducens via whole genome microarray analysis of the OmcF-deficient mutant (vol 73, pg 70, 2008), BC Kim, BL Postier, RJ Didonato, SK Chaudhuri, KR Nevin, and DR Lovley

Growth with high planktonic biomass in Shewanella oneidensis fuel cells, M Lanthier, KB Gregory, and DR Lovley

Antimicrobial polymers prepared by ROMP with unprecedented selectivity: A molecular construction kit approach, K Lienkamp, AE Madkour, A Musante, CF Nelson, K Nusslein, and GN Tew

Differential Requirements of Two recA Mutants for Constitutive SOS Expression in Escherichia coli K-12, JE Long, N Renzette, RC Centore, and SJ Sandler

Extracellular electron transfer: wires, capacitors, iron lungs, and more, DR Lovley

The microbe electric: conversion of organic matter to electricity, DR Lovley

The degree of redundancy in metabolic genes is linked to mode of metabolism, R Mahadevan and DR Lovley

Biogeochemistry of the Forest City Basin coalbed methane play, J McIntosh, A Martini, S Petsch, R Huang, and K Nusslein

Power output and columbic efficiencies from biofilms of Geobacter sulfurreducens comparable to mixed community microbial fuel cells, KP Nevin, H Richter, SF Covalla, JP Johnson, TL Woodard, AL Orloff, H Jia, M Zhang, and DR Lovley

Sustained removal of uranium from contaminated groundwater following stimulation of dissimilatory metal reduction, AL N'Guessan, HA Vrionis, CT Resch, PE Long, and DR Lovley

GEOC 35-Biogeochemical differences in pilot-scale bioremediation treatment plots undergoing iron reduction or sulfate reduction in a uranium-contaminated aquifer, AL N'Guessan, KH Williams, S Yabusaki, PE Long, and DR Lovley

Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation, RA O'Neil, DE Holmes, MV Coppi, LA Adams, MJ Larrahondo, JE Ward, KP Nevin, TL Woodard, HA Vrionis, AL N'Guessan, and DR Lovley

Uptake and intra-inclusion accumulation of exogenous immunoglobulin by Chlamydia-infected cells, DV Pollack, NL Croteau, and ES Stuart

Benefits of in-situ synthesized microarrays for analysis of gene expression in understudied microorganisms, B Postier, R DiDonato, KP Nevin, A Liu, B Frank, D Lovley, and BA Methe

Requirements for ATP binding and hydrolysis in RecA function in Escherichia coli, N Renzette and SJ Sandler

Electricity generation by Geobacter sulfurreducens attached to gold electrodes, H Richter, K McCarthy, KP Nevin, JP Johnson, VM Rotello, and DR Lovley

Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation, C Risso, BA Methe, H Elifantz, DE Holmes, and DR Lovley

Elucidation of an alternate isoleucine biosynthesis pathway in Geobacter sulfurreducens, C Risso, SJ Van Dien, A Orloff, DR Lovley, and MV Coppi

Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens, D Segura, R Mahadevan, K Juarez, and DR Lovley

Geobacter uraniireducens sp nov., isolated from subsurface sediment undergoing uranium bioremediation, ES Shelobolina, HA Vrionis, RH Findlay, and DR Lovley

Recombinant gas vesicles from Halobacterium sp. displaying SIV peptides demonstrate biotechnology potential as a pathogen peptide delivery vehicle, M Sremac and ES Stuart

Graphite electrode as a sole electron donor for reductive dechlorination of tetrachlorethene by Geobacter lovleyi, SM Strycharz, TL Woodard, JP Johnson, KP Nevin, RA Sanford, FE Loffler, and DR Lovley

Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function, HT Tran, J Krushkal, FM Antommattei, DR Lovley, and RM Weis

Quantification of Desulfovibrio vulgaris dissimilatory sulfite reductase gene expression during electron donor- and electron acceptor-limited growth, L Villanueva, SA Haveman, ZM Summers, and DR Lovley

Submissions from 2007

Steady state protein levels in Geobacter metallireducens grown with iron (III) citrate or nitrate as terminal electron acceptor, AJ Ahrendt, SL Tollaksen, C Lindberg, WH Zhu, JR Yates, KP Nevin, G Babnigg, DR Lovley, and CS Giometti

Rapid Changes in Gene Expression Dynamics in Response to Superoxide Reveal SoxRS-Dependent and Independent Transcriptional Networks, JL Blanchard, WY Wholey, EM Conlon, and PJ Pomposiello

Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site, JE Butler, Q He, KP Nevin, ZL He, JZ Zhou, and DR Lovley

UvrD limits the number and intensities of RecA-Green fluorescent protein structures in Escherichia coli K-12, RC Centore and SJ Sandler

Involvement of Geobacter sulfurreducens SfrAB in acetate metabolism rather than intracellular, respiration-linked Fe(III) citrate reduction, MV Coppi, RA O'Neil, C Leang, F Kaufmann, BA Methe, KP Nevin, TL Woodard, A Liu, and DR Lovley

Arsenic sequestration by nitrate respiring microbial communities in urban lake sediments, BP Gibney and K Nusslein

Comparative bacterial diversity in recent Hawaiian volcanic deposits of different ages, V Gomez-Alvarez, GM King, and K Nusslein

Prolixibacter bellariivorans gen nov, sp nov, a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell, DE Holmes, KP Nevin, TL Woodard, AD Peacock, and DR Lovley

Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments, DE Holmes, RA O'Neil, HA Vrionis, LA N'Guessan, I Ortiz-Bernad, MJ Larrahondo, LA Adams, JA Ward, JS Nicoll, KP Nevin, MA Chavan, JP Johnson, PE Long, and DR Lovley

Genome-wide expression profiling in Geobacter sulfurreducens: identification of Fur and RpoS transcription regulatory sites in a rel(Gsu) mutant, J Krushkal, B Yan, LN DiDonato, M Puljic, KP Nevin, TL Woodard, RM Adkins, BA Methe, and DR Lovley

A hand-off mechanism for primosome assembly in replication restart., M Lopper, R Boonsombat, SJ Sandler, and JL Keck

Reclassification of Trichlorobacter thiogenes as Geobacter thiogenes comb. nov., KP Nevin, DE Holmes, TL Woodard, SF Covalla, and DR Lovley

Evidence that OmcB and OmpB of Geobacter sulfurreducens are outer membrane surface proteins, XL Qian, G Reguera, T Mester, and DR Lovley

Possible nonconductive role of Geobacter sulfurreducens pilus nanowires in biofilm formation, G Reguera, RB Pollina, JS Nicoll, and DR Lovley

DinI and RecX modulate RecA-DNA structures in Escherichia coli K-12, N Renzette, N Gumlaw, and SJ Sandler

Lack of electricity production by Pelobacter carbinolicus indicates that the capacity for Fe(III) oxide reduction does not necessarily confer electron transfer ability to fuel cell anodes, H Richter, M Lanthier, KP Nevin, and DR Lovley

Importance of c-type cytochromes for U(VI) reduction by Geobacter sulfurreducens, ES Shelobolina, MV Coppi, AA Korenevsky, LN DiDonato, SA Sullivan, H Konishi, HF Xu, C Leang, JE Butler, BC Kim, and DR Lovley

Geobacter pickeringii sp nov., Geobacter argillaceus sp nov and Pelosinus fermentans gen. nov., sp nov., isolated from subsurface kaolin lenses, ES Shelobolina, KP Nevin, JD Blakeney-Hayward, CV Johnsen, TW Plaia, P Krader, T Woodard, DE Holmes, CG VanPraagh, and DR Lovley

Heat-shock sigma factor RpoH from Geobacter sulfurreducens, T Ueki and DR Lovley

Responses of rhizobia to desiccation in relation to osmotic stress, oxygen, and temperature, JAC Vriezen, FJ de Bruijn, and K Nusslein

Salinity constraints on subsurface archaeal diversity and methanogenesis in sedimentary rock rich in organic matter (vol 73, pg 4171, 2007), PJ Waldron, ST Petsch, AM Martini, and K Nusslein

Chronic respiratory disease in children: The prevalence of Chlamydia and Mycoplasma, WC Webley, K Lay, ES Stuart, C Andrzejewski, and PS Salva

Chronic respiratory disease in children: The prevalence of Chlamydia and Mycoplasma, WC Webley, K Lay, ES Stuart, C Andrzejewski, and PS Salva

The bronchial lavage of pediatric patients with asthma contains infectious Chlamlydia (vol 171, pg 1083, 2005), WC Webley, PS Salva, C Andrzejewski, F Cirino, CA West, Y Tilahun, and ES Stuart

The bronchial lavage of pediatric patients with asthma contains infectious Chlamlydia (vol 171, pg 1083, 2005), WC Webley, PS Salva, C Andrzejewski, F Cirino, CA West, Y Tilahun, and ES Stuart

Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens, B Yan, DR Lovley, and J Krushkal

Characterization of malate dehydrogenase from the hyperthermophilic archaeon Pyrobaculum islandicum, LJ Yennaco, YJ Hu, and JF Holden

Submissions from 2006

A novel dnaC mutation that suppresses priB rep mutant phenotypes in Escherichia coli K-12, R Boonsombat, SP Yeh, A Milne, and SJ Sandler

Genetic characterization of a single bifunctional enzyme for fumarate reduction and succinate oxidation in Geobacter sulfurreducens and engineering of fumarate reduction in Geobacter metallireducens, JE Butler, RH Glaven, A Esteve-Nunez, C Nunez, ES Shelobolina, DR Bond, and DR Lovley

Detection of Chlamydia in the peripheral blood cells of normal donors using in vitro culture, immunofluorescence microscopy and flow cytometry techniques, F Cirino, WC Webley, C West, NL Croteau, C Andrzejewski, and ES Stuart

Detection of Chlamydia in the peripheral blood cells of normal donors using in vitro culture, immunofluorescence microscopy and flow cytometry techniques, F Cirino, WC Webley, C West, NL Croteau, C Andrzejewski, and ES Stuart

Detection of Chlamydia in the peripheral blood cells of normal donors using in vitro culture, immunofluorescence microscopy and flow cytometry techniques (vol 6, pg 23, 2006), F Cirino, WC Webley, C West, NL Croteau, C Andrzejewski, and ES Stuart

Detection of Chlamydia in the peripheral blood cells of normal donors using in vitro culture, immunofluorescence microscopy and flow cytometry techniques (vol 6, pg 23, 2006), F Cirino, WC Webley, C West, NL Croteau, C Andrzejewski, and ES Stuart

Microbially induced cementation to control sand response to undrained shear, JT DeJong, MB Fritzges, and K Nusslein

Role of Rel(Gsu) in stress response and Fe(III) reduction in Geobacter sulfurreducens, LN DiDonato, SA Sullivan, BA Methe, KP Nevin, R England, and DR Lovley

The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions, YHR Ding, KK Hixson, CS Giometti, A Stanley, A Esteve-Nunez, T Khare, SL Tollaksen, WH Zhu, JN Adkins, MS Lipton, RD Smith, T Mester, and DR Lovley

Characterization of dissimilatory Fe(III) versus NO3- reduction in the hyperthermophilic archaeon Pyrobaculum aerophilum, LF Feinberg and JF Holden

Characterization of dissimilatory Fe(III) versus NO3- reduction in the hyperthermophilic archaeon Pyrobaculum aerophilum (vol 188, pg 525, 2006), LF Feinberg and JF Holden

c-Type Cytochromes in Pelobacter carbinolicus, SA Haveman, DE Holmes, YHR Ding, JE Ward, RJ DiDonato, and DR Lovley

Microarray and genetic analysis of electron transfer to electrodes in Geobacter sulfurreducens, DE Holmes, SK Chaudhuri, KP Nevin, T Mehta, BA Methe, A Liu, JE Ward, TL Woodard, J Webster, and DR Lovley

Citric acid cycle in the hyperthermophilic archaeon Pyrobaculum islandicum grown autotrophically, heterotrophically, and mixotrophically with acetate, YJ Hu and JF Holden

Distribution of extensive nifH gene diversity across physical soil microenvironments, JA Izquierdo and K Nusslein

Differential protein expression in the metal-reducing bacterium Geobacter sulfurreducens strain PCA grown with fumarate or ferric citrate, T Khare, A Esteve-Nunez, KP Nevin, WH Zhu, JR Yates, D Lovley, and CS Giometti

Two putative c-type multiheme cytochromes required for the expression of OmcB, an outer membrane protein essential for optimal Fe(III) reduction in Geobacter sulfurreducens, BC Kim, XL Qian, LA Ching, MV Coppi, and DR Lovley

Biofilms on biotic surfaces: A link in the carbon cycle on early Earth, S Leschine and A Alonso

Taming electricigens, D Lovley

Bug juice: harvesting electricity with microorganisms, DR Lovley

Microbial fuel cells: novel microbial physiologies and engineering approaches, DR Lovley

Harvesting energy from the marine sediment-water interface II - Kinetic activity of anode materials, DA Lowy, LM Tender, JG Zeikus, DH Park, and DR Lovley

Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling, R Mahadevan, DR Bond, JE Butler, A Esteve-Nunez, MV Coppi, BO Palsson, CH Schilling, and DR Lovley

A putative multicopper protein secreted by an atypical type II secretion system involved in the reduction of insoluble electron acceptors in Geobacter sulfurreducens, T Mehta, SE Childers, R Glaven, DR Lovley, and T Mester

Pretreatment with delta-tocotrienol reduces Chlamydia infection in mammalian cell lines, AM Mueller, ES Stuart, and B Tan

DNA microarray and proteomic analyses of the RpoS regulon in Geobacter sulfurreducens, C Nunez, A Esteve-Nunez, C Giometti, S Tollaksen, T Khare, W Lin, DR Lovley, and BA Methe

Broad-spectrum antibacterial activity by a novel abiogenic peptide mimic, K Nusslein, L Arnt, J Rennie, C Owens, and GN Tew

Biofilm and nanowire production leads to increased current in Geobacter sulfurreducens fuel cells, G Reguera, KP Nevin, JS Nicoll, SF Covalla, TL Woodard, and DR Lovley

Evolutionary origins of the eukaryotic shikimate pathway: Gene fusions, horizontal gene transfer, and endosymbiotic replacements, TA Richards, JB Dacks, SA Campbell, JL Blanchard, PG Foster, R McLeod, and CW Roberts

Desiccation responses and survival of Sinorhizobium meliloti USDA 1021 in relation to growth phase, temperature, chloride and sulfate availability, JAC Vriezen, FJ Bruijn, and K Nusslein

Successful removal of Chlamydia pneumoniae from plateletpheresis products collected using automated leukoreduction hemapheresis techniques, W Webley, E Stuart, F Cirino, F Cahili, T Stec, and C Andrzejewski

Successful removal of Chlamydia pneumoniae from plateletpheresis products collected using automated leukoreduction hemapheresis techniques, W Webley, E Stuart, F Cirino, F Cahili, T Stec, and C Andrzejewski

Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information, B Yan, C Nunez, T Ueki, A Esteve-Nunez, M Puljic, RM Adkins, BA Methe, DR Lovley, and J Krushkal