Off-campus UMass Amherst users: To download dissertations, please use the following link to log into our proxy server with your UMass Amherst user name and password.

Non-UMass Amherst users, please click the view more button below to purchase a copy of this dissertation from Proquest.

(Some titles may also be available free of charge in our Open Access Dissertation Collection, so please check there first.)

Establishing Brachypodium distachyon as a new model system for understanding iron homeostasis in grasses

Burcu Kokturk Yordem, University of Massachusetts Amherst


Brachypodium distachyon (brachypodium) is a temperate grass that has great promise as a model system to study grass-specific traits for crop improvement. Under iron (Fe)-deficient conditions, grasses synthesize and secrete Fe(III)-chelating agents called phytosiderophores (PS). In maize, Yellow Stripe1 (ZmYS1) is the transporter responsible for uptake of Fe(III)-PS complexes from the soil. Some members of the family of related proteins called Yellow Stripe-Like (YSL) have roles in internal Fe translocation of plants, while the function of other members remains uninvestigated. One aim of this study was to establish brachypodium as a model system to study Fe homeostasis in grasses. HDMA was detected as the dominant type of PS secreted by brachypodium, and its secretion is diurnally regulated in parallel to that of related species such as barley and wheat. Nineteen YSL family members were identified in brachypodium, and their expression profiles in response to Fe deficiency were analyzed. Phylogenetic analysis revealed that some YSLs group into a grass-specific clade, and expression of the BdYSL members of this clade could not be detected in shoots or roots, suggesting grass-specific functions in reproductive tissues. The Fe status of the plant can regulate expression of several BdYSL genes in both shoots and roots suggesting roles in Fe homeostasis. Brachypodium YS1 knockdown lines were also generated to test Fe(III)-PS transport abilities of certain YSL proteins. In the context of this dissertation, an EMS mutagenized population of brachypodium was produced. One mutant with the iron deficiency symptom interveinal chlorosis was characterized. Metal content analyses revealed that mutant plants are low in Fe, Zn and Cu. Mutant plants are capable of synthesizing PS in normal amounts, but they do not release the PS from roots into the soil solution, suggesting that gene underlying this mutation functions to allow secretion of PS. Performing bulk segregant array mapping and fine mapping using SNP markers, the location of this new mutation was mapped to a 1.7Mb interval on chromosome 5. Cloning of this gene is likely to fill in the missing part of the iron uptake mechanism in grasses.

Subject Area

Molecular biology|Genetics|Plant sciences

Recommended Citation

Yordem, Burcu Kokturk, "Establishing Brachypodium distachyon as a new model system for understanding iron homeostasis in grasses" (2012). Doctoral Dissertations Available from Proquest. AAI3518403.