Publication Date
2023
Journal or Book Title
Plants
Abstract
In order to discover sRNA that might function during iron deficiency stress, RNA was prepared from phloem exudates of Arabidopsis thaliana, and used for RNA-seq. Bioanalyzer results indicate that abundant RNA from phloem is small in size—less than 200 nt. Moreover, typical rRNA bands were not observed. Sequencing of eight independent phloem RNA samples indicated that tRNA-derived fragments, specifically 5′ tRFs and 5′ tRNA halves, are highly abundant in phloem sap, comprising about 46% of all reads. In addition, a set of miRNAs that are present in phloem sap was defined, and several miRNAs and sRNAs were identified that are differentially expressed during iron deficiency.
DOI
https://doi.org/10.3390/plants12152782
Volume
12
Special Issue
Long Distance Signaling in Plants
Issue
15
License
UMass Amherst Open Access Policy
Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 License.
Recommended Citation
Bakirbas, Ahmet; Castro-Rodriguez, Rosario; and Walker, Elsbeth L., "The Small RNA Component of Arabidopsis thaliana Phloem Sap and Its Response to Iron Deficiency" (2023). Plants. 664.
https://doi.org/10.3390/plants12152782